​​​The Agency's administrative and management structure comprises of a Management Board, an Executive Director and Advisory Groups. The employees of the Agency are split into departments, units and sectors that are located in its headquarters in Tallinn and operational site in Strasbourg.

Since its first years in action, eu-LISA has been committed to the development and retention of its employees. The goal is to recruit and retain personnel that possess the competencies and skills required for the Agency to successfully implement its strategy and working programmes.

The agency focuses its efforts on the professional and career development of its staff and the evolvement of the organisation based on its m​ission, vision and values, aligning the capabilities of the organisation’s technology with extensive competencies of its human capital.​